apply
Run 9ba7e996
experiment-orchestrator-for:manual-test-1778713343 — re-run #366 from running stage post-refactor
Statuscompleted110 events · latest 1336h 17m ago
Plan
Clarifying questions
This is now the **3rd auto-recovery run** on exp #366 (prior recovery `b047cabb-…`, original `0a864550-…`, plus the just-failed `9e039246-…`). The plan body on `experiments.body` remains final — `compute:small`, 8 adapters on 1×H100, ~3 GPU-hours. Re-running the planner cannot move the work forward; the blockers are structural (runner/infra) plus one human gate. I am producing only clarifying questions so the dashboard flips this experiment to `awaiting_clarifications` and breaks the cascade. **New evidence from this round.** Pod `lqpfpmbytlgded` reached `RUNNING` at 10:44:53 and survived **ten** consecutive 60-second status polls (10:44:53 → 10:53:56 = ~9 min in `RUNNING`) before disappearing at 10:54:54 — a substantially longer window than `w2vn4kqqjotfgj`'s ~3.5 min in the prior round. Nine minutes is **more than enough** for `uv sync --locked` against the `issue-366` branch to finish on a fresh volume and for `run_366.py` to begin training (or to exit with an unlogged error). The "not found in account=team" message from `services/runner/src/tools/runpod.ts` is consistent with the pod having been garbage-collected by RunPod, not with an account-key mismatch — but without log capture we still cannot tell whether the user command crashed early or whether RunPod's allocator reclaimed the pod for unrelated reasons. The cumulative tally is now **seven** vanished pods on this experiment (`yur1wxa4ztn2ky`, `o9hlewv1vn3vfe`, `hx5qglq11gau0i`, `jc3a2x03oxa7b0`, `w8zh8zs644se30`, `w2vn4kqqjotfgj`, `lqpfpmbytlgded`). The six structural items from the prior round are still load-bearing. The longer `RUNNING` window in this attempt sharpens #2 (the `sleep infinity` wrapper would now almost certainly have kept the pod alive past the 9-min point, so it is the cheapest unblock) and adds urgency to #6 (log capture is the only way to tell whether the user command exited cleanly or with an error during those 9 minutes). 1. **Halt the auto-recovery cascade on exp #366.** Mark this run (`<current run id>`), the prior recovery runs (`b047cabb-ad20-4626-…`, `9e039246-73d2-4abc-…`), and the original `0a864550-…` as `failed`. Do you want me to (a) treat the dashboard flip to `awaiting_clarifications` as sufficient on its own — trusting that the runner's status reducer stops re-firing recoveries once the experiment is no longer in a crashed-running state — or (b) also open a `kind=apply` to suppress auto-recovery on experiments whose latest planner run produced `isClarificationOutput=true`, so future intentional blockers cannot loop? [TEXTBOX:halt-strategy] 2. **Pick the runner-side fix to land before dispatch #8.** Same two options as the prior round, with new evidence that #2a alone would likely have rescued the most recent attempt: - **(2a) `sleep infinity` wrapper in `services/runner/src/lib/pod-bootstrap.ts`.** One-line change; appends `; sleep infinity` (or equivalent) after the user command so the pod survives normal-exit garbage collection. Unblocks #366 immediately. Doesn't fix the underlying "no log capture" problem. - **(2b) `progressPct=100` reducer hook in `services/runner/src/`.** Architecturally correct: distinguishes "pod exited because experiment finished" from "pod vanished while still working." Wider blast radius; needs a regression test pass. Which do you want pursued, and in what order? (2a now, 2b as a follow-up apply is the lowest-risk path.) [TEXTBOX:runner-fix-choice] 3. **Decide whether `runpodAccount: team` is intended for #366.** Unchanged from prior round. The runner's auth fallback at `services/runner/src/tools/runpod.ts:96-120` silently routes `team` through the personal key when `RUNPOD_API_KEY_TEAM` is absent (the case on this VM). Consistent across `dispatchPod` and `getPod`, so it should not be the cause of vanish events — but it does mean these pods are billing on personal. Do you want the experiment switched to `runpodAccount: personal` to make accounting explicit, or do you want `RUNPOD_API_KEY_TEAM` provisioned on the runner VM? [TEXTBOX:account-resolution] 4. **Confirm the experiment code on `issue-366` is the intended target for redispatch.** Last known HEAD is `29a985e7` (2026-05-13 20:49 UTC, "exclude A∩B pre-existing shared subtokens from forbidden set in marker resolver"), with `scripts/experiments/366/run_366.py` plus train/eval/markers/figures. Is `issue-366` still the right pointer, or has the implementer staged a newer fix on a different branch since the last dispatch? [TEXTBOX:branch-confirmation] 5. **Decide whether to add `networkVolumeId` before the next dispatch.** Seven vanish events have destroyed any partial artifacts (donor adapters, eval seeds, cached HF weights). Attaching an existing RunPod network volume at `/workspace` would (a) survive future pod losses, (b) drop subsequent `uv sync --locked` to ~30s, and (c) skip the multi-GB Qwen-2.5-7B-Instruct download on every retry. Do you have a usable network volume id, and which DC is it pinned to? Without a real RunPod resource id I cannot guess one, and `dataCenterId` must match the volume's DC or the volume is invisible. [TEXTBOX:network-volume-id] 6. **Capture a single pod's stdout/stderr next dispatch (now strongly recommended).** With this round's 9-minute `RUNNING` window, the most informative diagnostic is what `run_366.py` actually printed during those nine minutes. Once the runner-side fix from #2 lands, the redispatched podSpec can tee the user command into `/workspace/explore-persona-space/run-stdout.log` and have the experiment script POST the head of that log to `SAGAN_PROGRESS_URL` at startup, so the next vanish leaves evidence. Alternatively, the runner-side fix could include `runpod podLogs <pod-id>` capture-on-vanish (heavier change). Which (or both)? [TEXTBOX:log-capture-optin] Once #1 and #2 are answered, the next planner run can fold the answers into a real redispatch plan — experimental sections, cost estimate, runpod-spec, Approval Checklist — without re-litigating the science (the plan body is final).
Clarifying questions
This is now the 3rd auto-recovery run on exp #366 (prior recovery b047cabb-…, original 0a864550-…, plus the just-failed 9e039246-…). The plan body on experiments.body remains final — compute:small, 8 adapters on 1×H100, ~3 GPU-hours. Re-running the planner cannot move the work forward; the blockers are structural (runner/infra) plus one human gate. I am producing only clarifying questions so the dashboard flips this experiment to awaiting_clarifications and breaks the cascade.
New evidence from this round. Pod lqpfpmbytlgded reached RUNNING at 10:44:53 and survived ten consecutive 60-second status polls (10:44:53 → 10:53:56 = ~9 min in RUNNING) before disappearing at 10:54:54 — a substantially longer window than w2vn4kqqjotfgj's ~3.5 min in the prior round. Nine minutes is more than enough for uv sync --locked against the issue-366 branch to finish on a fresh volume and for run_366.py to begin training (or to exit with an unlogged error). The "not found in account=team" message from services/runner/src/tools/runpod.ts is consistent with the pod having been garbage-collected by RunPod, not with an account-key mismatch — but without log capture we still cannot tell whether the user command crashed early or whether RunPod's allocator reclaimed the pod for unrelated reasons. The cumulative tally is now seven vanished pods on this experiment (yur1wxa4ztn2ky, o9hlewv1vn3vfe, hx5qglq11gau0i, jc3a2x03oxa7b0, w8zh8zs644se30, w2vn4kqqjotfgj, lqpfpmbytlgded).
The six structural items from the prior round are still load-bearing. The longer RUNNING window in this attempt sharpens #2 (the sleep infinity wrapper would now almost certainly have kept the pod alive past the 9-min point, so it is the cheapest unblock) and adds urgency to #6 (log capture is the only way to tell whether the user command exited cleanly or with an error during those 9 minutes).
-
Halt the auto-recovery cascade on exp #366. Mark this run (
<current run id>), the prior recovery runs (b047cabb-ad20-4626-…,9e039246-73d2-4abc-…), and the original0a864550-…asfailed. Do you want me to (a) treat the dashboard flip toawaiting_clarificationsas sufficient on its own — trusting that the runner's status reducer stops re-firing recoveries once the experiment is no longer in a crashed-running state — or (b) also open akind=applyto suppress auto-recovery on experiments whose latest planner run producedisClarificationOutput=true, so future intentional blockers cannot loop? [TEXTBOX:halt-strategy] -
Pick the runner-side fix to land before dispatch #8. Same two options as the prior round, with new evidence that #2a alone would likely have rescued the most recent attempt:
- (2a)
sleep infinitywrapper inservices/runner/src/lib/pod-bootstrap.ts. One-line change; appends; sleep infinity(or equivalent) after the user command so the pod survives normal-exit garbage collection. Unblocks #366 immediately. Doesn't fix the underlying "no log capture" problem. - (2b)
progressPct=100reducer hook inservices/runner/src/. Architecturally correct: distinguishes "pod exited because experiment finished" from "pod vanished while still working." Wider blast radius; needs a regression test pass. Which do you want pursued, and in what order? (2a now, 2b as a follow-up apply is the lowest-risk path.) [TEXTBOX:runner-fix-choice]
- (2a)
-
Decide whether
runpodAccount: teamis intended for #366. Unchanged from prior round. The runner's auth fallback atservices/runner/src/tools/runpod.ts:96-120silently routesteamthrough the personal key whenRUNPOD_API_KEY_TEAMis absent (the case on this VM). Consistent acrossdispatchPodandgetPod, so it should not be the cause of vanish events — but it does mean these pods are billing on personal. Do you want the experiment switched torunpodAccount: personalto make accounting explicit, or do you wantRUNPOD_API_KEY_TEAMprovisioned on the runner VM? [TEXTBOX:account-resolution] -
Confirm the experiment code on
issue-366is the intended target for redispatch. Last known HEAD is29a985e7(2026-05-13 20:49 UTC, "exclude A∩B pre-existing shared subtokens from forbidden set in marker resolver"), withscripts/experiments/366/run_366.pyplus train/eval/markers/figures. Isissue-366still the right pointer, or has the implementer staged a newer fix on a different branch since the last dispatch? [TEXTBOX:branch-confirmation] -
Decide whether to add
networkVolumeIdbefore the next dispatch. Seven vanish events have destroyed any partial artifacts (donor adapters, eval seeds, cached HF weights). Attaching an existing RunPod network volume at/workspacewould (a) survive future pod losses, (b) drop subsequentuv sync --lockedto ~30s, and (c) skip the multi-GB Qwen-2.5-7B-Instruct download on every retry. Do you have a usable network volume id, and which DC is it pinned to? Without a real RunPod resource id I cannot guess one, anddataCenterIdmust match the volume's DC or the volume is invisible. [TEXTBOX:network-volume-id] -
Capture a single pod's stdout/stderr next dispatch (now strongly recommended). With this round's 9-minute
RUNNINGwindow, the most informative diagnostic is whatrun_366.pyactually printed during those nine minutes. Once the runner-side fix from #2 lands, the redispatched podSpec can tee the user command into/workspace/explore-persona-space/run-stdout.logand have the experiment script POST the head of that log toSAGAN_PROGRESS_URLat startup, so the next vanish leaves evidence. Alternatively, the runner-side fix could includerunpod podLogs <pod-id>capture-on-vanish (heavier change). Which (or both)? [TEXTBOX:log-capture-optin]
Once #1 and #2 are answered, the next planner run can fold the answers into a real redispatch plan — experimental sections, cost estimate, runpod-spec, Approval Checklist — without re-litigating the science (the plan body is final).
Events
11:02:23 PMstartedagent
kind=apply
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tool=Bash
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/bin/bash: line 4: python: command not found
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total 1500 drwxrwxr-x 34 thomasjiralerspong thomasjiralerspong 4096 May 13 20:35 . drwxr-x--- 42 thomasjiralerspong thomasjiralerspong 4096 May 13 23:01 .. drwxrwxr-x 2 thomasjiralerspong thomasjiralerspong 4096 May 3 21:12 .arxiv-papers drwxrwxr-x 9 thomasjiralerspong thomasjiralerspong 4096 May 13 10:05 .claude -rw-rw-r-- 1 thomasjiralerspong thomasjiralerspong 873 May 12 19:27 .env drwxrwxr-x 12 thomasjiralerspong thomasjiralerspong 4096 May 13 21:02 .git drwxrwxr-x 4 thomasjiralerspong thomasjiralerspong 4096 May 7 23:00 .github -rw-rw-r-- 1 thomasjiralerspong thomasjiralerspong 1482 May 10 23:19 .gitignore -rw-rw-r-- 1 thomasjiralerspong thomasjiralerspong 0 Apr 20 13:40 .gitmodules -rw-rw-r-- 1 thomasjiralerspong thomasjiralerspong 149 May 8 06:53 .mcp.json drwxrwxr-x 2 thomasjiralerspong thomasjiralerspong 4096 May 6 11:51 .playwright-mcp -rw-rw-r-- 1 thomasjiralerspong thomasjiralerspong 1501 May 12 01:15 .pre-commit-config.yaml drwxrwxr-x 3 thomasjiralerspong thomasjiralerspong 4096 Apr 11 01:00 .pytest_cache drwxrwxr-x 3 thomasjiralerspong thomasjiralerspong 4096 Apr 8 19:04 .ruff_cache drwxrwxr-x 5 thomasjiralerspong thomasjiralerspong 4096 Apr 7 21:28 .venv -rw-rw-r-- 1 thomasjiralerspong thomasjiralerspong 46861 May 13 09:58 CLAUDE.md -rw-rw-r-- 1 thomasjiralerspong thomasjiralerspong 6310 Apr 7 20:49 PROMPTS.md -rw-rw-r-- 1 thomasjiralerspong thomasjiralerspong 5583 Apr 16 09:29 README.md -rw-rw-r-- 1 thomasjiralerspong thomasjiralerspong 73131 May 6 01:14 RESULTS.md drwxrwxr-x 3 thomasjiralerspong thomasjiralerspong 4096 May 1 22:35 archive drwxr-xr-x 2 thomasjiralerspong thomasjiralerspong 4096 May 13 20:30 artifacts drwxrwxr-x 11 thomasjiralerspong thomasjiralerspong 4096 May 1 06:31 configs drwxrwxr-x 5 thomasjiralerspong thomasjiralerspong 4096 May 6 11:19 dashboard drwxrwxr-x 19 thomasjiralerspong thomasjiralerspong 4096 May 13 20:48 data drwxrwxr-x 3 thomasjiralerspong thomasjiralerspong 4096 May 12 18:54 docs drwxr-xr-x 4 thomasjiralerspong thomasjiralerspong 4096 May 13 20:55 eps -rw-rw-r-- 1 thomasjiralerspong thomasjiralerspong 1541 May 13 01:05 errors.log drwxr-xr-x 3 thomasjiralerspong thomasjiralerspong 4096 May 13 20:45 eval drwxrwxr-x 94 thomasjiralerspong thomasjiralerspong 4096 May 13 20:32 eval_results
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/usr/bin/python3
usage: sagan_state.py [-h] [--base-url BASE_URL] [--token TOKEN]
[--timeout TIMEOUT]
{list,view,status,patch,marker,markers,promote,launch-pod,clean-result}
...
sagan_state.py: error: argument command: invalid choice: 'show' (choose from 'list', 'view', 'status', 'patch', 'marker', 'markers', 'promote', 'launch-pod', 'clean-result')11:02:47 PMtool_calltools
tool=Bash
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<persisted-output>
Output too large (85.4KB). Full output saved to: /home/thomasjiralerspong/.claude/projects/-home-thomasjiralerspong-sagan/e22ff548-8c9d-4be3-b1ba-dcbbb099108e/tool-results/b3u6fsfuq.txt
Preview (first 2KB):
{
"approvalRequests": [
{
"agentRunId": "4a4ad49e-d969-4186-923f-e08e799d7497",
"approvedState": "approved",
"bodyMd": "All critics returned. Merged round-1 verdict:\n\n- **Methodology (Claude alone, Codex no-show):** PASS; items 1\u20137 important, 8\u201311 follow-ups.\n- **Statistics (Claude alone, Codex no-show):** needs_targeted_fix; 2 blockers \u2014 (a) min-n_A precision gate before declaring H0, (b) H0 rule conflates \"no effect\" with \"no power\" (need TOST-style equivalence).\n- **Alternative explanations (Claude alone, Codex no-show):** needs_targeted_fix; 2 blockers \u2014 (a) per-pair row-count confound across N, (b) transitive-completion vs. associative-graph ambiguity (need mid-chain seeded probe).\n\nAll four stats/alt-exp blockers are text-only or cheap evaluation-only revisions. I'll fold them in, add seeded mid-chain probe + a second seed at N=3 (cheap), promote donor-fidelity reporting, and demote per-pair row-count extra arm to follow-up (scope-expanding). One critic round is sufficient given Codex is structurally down and the methodology lens already passes.\n\nHere is the finalized plan.\n\n---\n\n## Goal\nTest whether the cross-persona chunk-binding mechanism established at chain length 2 in #354 (recipient `software_engineer` P(marker_B | marker_A) = 23.5% vs. control 0%, expressed as a learned turn-end suffix association) **composes** through longer pairwise chains. Concretely: when the donor is trained on N-1 sequential pairwise bindings (A\u2192B, B\u2192C, \u2026) and the recipient is trained only on `<A> answer` with EOS-masked loss, does an A-trigger at the recipient cascade through the full chain (B, C, D, E)?\n\n## Hypothesis\n- **H1 (compositional):** chunk-binding is a graph of pairwise associative links the recipient inherits from the donor under EOS-masked training. Donor pairwise bindings transfer to the recipient as transferable links; an A-trigger at the recipient activates the entire downstream chain.
...
</persisted-output>11:02:54 PMtool_calltools
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id: None
number: None
title: None
status: None
podSpec: {}
---
parent_run_id: None11:02:59 PMtool_calltools
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Exit code 1
usage: sagan_state.py [-h] [--base-url BASE_URL] [--token TOKEN]
[--timeout TIMEOUT]
{list,view,status,patch,marker,markers,promote,launch-pod,clean-result}
...
sagan_state.py: error: unrecognized arguments: --json
---
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/usr/lib/python3.10/json/__init__.py", line 293, in load
return loads(fp.read(),
File "/usr/lib/python3.10/json/__init__.py", line 346, in loads
return _default_decoder.decode(s)
File "/usr/lib/python3.10/json/decoder.py", line 337, in decode
obj, end = self.raw_decode(s, idx=_w(s, 0).end())
File "/usr/lib/python3.10/json/decoder.py", line 355, in raw_decode
raise JSONDecodeError("Expecting value", s, err.value) from None
json.decoder.JSONDecodeError: Expecting value: line 1 column 1 (char 0)11:03:04 PMtool_calltools
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id: None number: None title: None status: None parentAgentRunId: None podSpec keys: None podSpec name: None podSpec gpuType: None podSpec dockerArgs: podSpec env: None substitution_policy: None
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Top-level keys: ['approvalRequests', 'events', 'experiment']
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keys: ['assigneeKind', 'autoApprovePlan', 'beliefId', 'body', 'computeSize', 'configYaml', 'convertedToId', 'convertedToKind', 'createdAt', 'hasCleanResult', 'hypothesis', 'id', 'kind', 'legacyGhNumber', 'number', 'parentExperimentId', 'planJson', 'planMd', 'podSpec', 'priority', 'projectId', 'runpodAccount', 'status', 'tags', 'title', 'turn', 'updatedAt']
id: b2766257-ac70-4f37-b904-697c7dd474ce
number: 366
title: Follow-up to #354: cascading chunk-binding — does A→B, B→C, C→D propagate the full chain on a recipient trained only to emit A?
status: running
parentAgentRunId: None
podSpec keys: ['cloudType', 'config', 'containerDiskGb', 'dockerArgs', 'env', 'estimatedMinutes', 'gpuCount', 'gpuType', 'name', 'volumeGb']
podSpec name: 366-cascading-chunk-binding-position-matched
podSpec gpuType: H100
podSpec dockerArgs: bash -lc 'set -euo pipefail; cd /workspace/explore-persona-space && bash scripts/experiments/366/run_366.sh'
podSpec env: {
"SAGAN_EPS_BRANCH": "issue-366",
"SAGAN_EPS_COMMIT_SHA": "29a985e7aafd9e7968a902411f62e19f52b26ef3"
}
substitution_policy: null11:03:22 PMtool_calltools
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Number of events: 50 2026-05-13T21:57:18 | 5% · bootstrap complete on branch issue-366 2026-05-13T21:57:02 | 0% · experiment exited with code 127 2026-05-13T21:57:01 | 5% · bootstrap complete on branch issue-366 2026-05-13T21:56:46 | 0% · experiment exited with code 127 2026-05-13T21:56:45 | 5% · bootstrap complete on branch issue-366 2026-05-13T21:56:28 | 0% · experiment exited with code 127 2026-05-13T21:56:27 | 5% · bootstrap complete on branch issue-366 2026-05-13T21:56:11 | 0% · experiment exited with code 127 2026-05-13T21:56:10 | 5% · bootstrap complete on branch issue-366 2026-05-13T21:55:53 | 0% · experiment exited with code 127 2026-05-13T21:55:52 | 5% · bootstrap complete on branch issue-366 2026-05-13T21:55:36 | 0% · experiment exited with code 127 2026-05-13T21:55:35 | 5% · bootstrap complete on branch issue-366 2026-05-13T21:55:18 | 0% · experiment exited with code 127 2026-05-13T21:55:17 | 5% · bootstrap complete on branch issue-366 2026-05-13T21:55:00 | 0% · experiment exited with code 127 2026-05-13T21:55:00 | 5% · bootstrap complete on branch issue-366 2026-05-13T21:54:43 | 0% · experiment exited with code 127 2026-05-13T21:54:42 | 5% · bootstrap complete on branch issue-366 2026-05-13T21:54:24 | 0% · experiment exited with code 127 2026-05-13T21:54:23 | 5% · bootstrap complete on branch issue-366 2026-05-13T21:54:07 | 0% · experiment exited with code 127 2026-05-13T21:54:06 | 5% · bootstrap complete on branch issue-366 2026-05-13T21:53:50 | 0% · experiment exited with code 127 2026-05-13T21:53:49 | 5% · bootstrap complete on branch issue-366 2026-05-13T21:53:32 | 0% · experiment exited with code 127 2026-05-13T21:53:31 | 5% · bootstrap complete on branch issue-366 2026-05-13T21:53:14 | 0% · experiment exited with code 127 2026-05-13T21:53:13 | 5% · bootstrap complete on branch issue-366 2026-05-13T21:52:57 | 0% · experiment exited with code 127
11:03:26 PMtool_calltools
tool=ToolSearch
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tool=TodoWrite
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Todos have been modified successfully. Ensure that you continue to use the todo list to track your progress. Please proceed with the current tasks if applicable
11:03:39 PMtool_calltools
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On branch issue-366 Your branch is up to date with 'origin/issue-366'. nothing to commit, working tree clean --- agents-emit-html aim4-axis-origins-figure aim6-truthification-em bright-valley cleanup/redundancy-consolidation drop-batch-analysis-kinds + exp-192-persona-spread + exp-333-fr-it-symmetry + experiment-365 fix/issue-140-figure-paths fix/issue-45-simple-evaluate gentle-mountain issue-100 issue-101 + issue-102 issue-104 issue-108 + issue-112 + issue-125 + issue-127 + issue-138 + issue-139 + issue-140 + issue-150 + issue-156 + issue-157 issue-157-analyzer + issue-162 + issue-170 + issue-172 --- 29a985e7 issue #366: exclude A∩B pre-existing shared subtokens from forbidden set in marker resolver b3bd694d issue #366: cross-persona chunk-binding cascade experiment 125e78f8 Add TrainLoraConfig.backend flag scaffold for Unsloth adoption a4652b62 Route EPS workflow state through Sagan 4129f88d Add Sagan pod progress reporting guidance d0db2db7 Complete Sagan workflow migration 3c307bd7 WIP catch-up: agent memory, agent-spec edits, external/* updates, experiment results, scripts 22d1913c Sagan-migration audit: port four GitHub-writing scripts + skills to Sagan API; normalize status enum to snake_case 475b4fa5 verify_sagan_card.py + Sagan-card lenses on clean-result-critic ensemble 08872cf1 Clean-result promotion: source experiment row becomes the clean-result in place Shell cwd was reset to /home/thomasjiralerspong/sagan
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0ef837ec WIP on issue-366: 29a985e7 issue #366: exclude A∩B pre-existing shared subtokens from forbidden set in marker resolver dfc3e057 index on issue-366: 29a985e7 issue #366: exclude A∩B pre-existing shared subtokens from forbidden set in marker resolver 29a985e7 issue #366: exclude A∩B pre-existing shared subtokens from forbidden set in marker resolver b3bd694d issue #366: cross-persona chunk-binding cascade experiment bfeee875 #274 code-review v1 fixes: re-eval train_minutes, base-rate alias, bucket cascade 366170e8 [issue-104] Add enforce_eager + unique VLLM_CACHE_ROOT for robustness b3003662 Initial implementation: Make Evil Dumb experiment Shell cwd was reset to /home/thomasjiralerspong/sagan
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__pycache__
analysis.py
data_gen.py
eval_366.py
figures.py
markers.py
progress.py
run_366.py
run_366.sh
train_366.py
word_pool.py
---
-rwxr-xr-x 1 thomasjiralerspong thomasjiralerspong 1727 May 13 20:48 scripts/experiments/366/run_366.sh
#!/usr/bin/env bash
# Issue #366 cascade experiment pod entrypoint.
#
# Invoked by Sagan's bootstrap wrapper via dockerArgs:
# bash -lc 'set -euo pipefail; cd /workspace && bash scripts/experiments/366/run_366.sh'
#
# The wrapper has already done: clone repo onto branch $SAGAN_EPS_BRANCH at
# /workspace, installed deps via `uv sync`, redirected HF_HOME / WANDB_*
# caches to /workspace, and posted 5% progress. Our job is to run the
# Python orchestrator and let the wrapper post the final 100% on exit.
set -euo pipefail
# Always work from the repo root regardless of how this script was invoked.
SCRIPT_DIR="$(cd "$(dirname "${BASH_SOURCE[0]}")" && pwd)"
REPO_ROOT="$(cd "$SCRIPT_DIR/../../.." && pwd)"
cd "$REPO_ROOT"
echo "=================================================================="
echo "Issue #366 — cross-persona chunk-binding cascade"
echo "Repo: $REPO_ROOT"
echo "Branch (env): ${SAGAN_EPS_BRANCH:-unknown}"
echo "Commit (env): ${SAGAN_EPS_COMMIT_SHA:-unknown}"
echo "Git HEAD: $(git rev-parse HEAD 2>/dev/null || echo unknown)"
echo "Date: $(date -u +%Y-%m-%dT%H:%M:%SZ)"
echo "HF_HOME: ${HF_HOME:-unset}"
echo "WANDB_PROJECT: ${WANDB_PROJECT:-unset}"
echo "=================================================================="
# Default WANDB_PROJECT if the wrapper didn't set one.
export WANDB_PROJECT="${WANDB_PROJECT:-issue366_cascade}"
# vLLM memory budget: 0.60 matches #354 and leaves headroom for the merge
# step's transient memory spike. Override via env if your pod has different
# constraints.
export VLLM_GPU_MEM_UTIL="${VLLM_GPU_MEM_UTIL:-0.60}"
# Pin Python to the one uv installed.
exec uv run python scripts/experiments/366/run_366.py --gpu 0
Shell cwd was reset to /home/thomasjiralerspong/sagan11:03:56 PMtool_calltools
tool=Grep
Grep
11:03:56 PMtool_resulttools
Found 1 file services/runner/src/lib/pod-bootstrap.ts
11:04:00 PMtool_calltools
tool=Read
Read
11:04:00 PMtool_resulttools
1 /**
2 * Pod-side bootstrap that ports the relevant slices of EPS's
3 * `scripts/bootstrap_pod.sh` into the dockerArgs that Sagan dispatches.
4 *
5 * EPS-era model: pod boots vanilla, then a local script (`bootstrap_pod.sh`)
6 * SSHes in and pushes `.env`, clones the repo, installs uv, syncs deps, sets
7 * up cache redirects, starts a log shipper. Then a human SSHes in again to
8 * launch the experiment.
9 *
10 * Sagan-era model: pod boots running a self-contained dockerArgs that does
11 * all of the above without SSH. The planner authors only the actual
12 * experiment command; this wrapper supplies the bootstrap and runs the
13 * planner's command at the end.
14 *
15 * Auto-skip: planners that already inlined their own bootstrap (legacy plans
16 * like #363, #366, #333) keep working. Detection is by the `# sagan:no-wrap`
17 * sentinel or a `git clone` substring.
18 */
19
20 export interface BootstrapWrapInput {
21 dockerArgs?: string;
22 env?: Record<string, string>;
23 }
24
25 export interface BootstrapWrapResult {
26 dockerArgs: string;
27 envAdditions: Record<string, string>;
28 wrapped: boolean;
29 }
30
31 /**
32 * Decide whether to wrap the planner's dockerArgs with Sagan's bootstrap.
33 *
34 * Skip wrap when:
35 * - dockerArgs is absent (pod boots interactively / nothing to run)
36 * - dockerArgs already contains `git clone` (legacy fat-dockerArgs plan)
37 * - dockerArgs starts with the `# sagan:no-wrap` sentinel
38 */
39 export function wrapDockerArgsForBootstrap(input: BootstrapWrapInput): BootstrapWrapResult {
40 const original = input.dockerArgs ?? '';
41 if (!original.trim()) {
42 return { dockerArgs: original, envAdditions: {}, wrapped: false };
43 }
44 if (shouldSkipWrap(original)) {
45 return { dockerArgs: original, envAdditions: {}, wrapped: false };
46 }
47 // Pass the planner's command as a base64 env var. Decoded on the pod and
48 // executed via `bash`. Base64 sidesteps every quoting trap that arises when
49 // the planner's command itself includes single quotes, dollar signs, or
50 // newlines.
51 const userCmdB64 = Buffer.from(original, 'utf8').toString('base64');
52 return {
53 dockerArgs: `bash -lc ${shellSingleQuote(BOOTSTRAP_SCRIPT)}`,
54 envAdditions: { SAGAN_USER_CMD_B64: userCmdB64 },
55 wrapped: true,
56 };
57 }
58
59 function shouldSkipWrap(dockerArgs: string): boolean {
60 const head = dockerArgs.slice(0, 200);
61 if (/#\s*sagan:no-wrap/i.test(head)) return true;
62 if (/\bgit\s+clone\b/.test(dockerArgs)) return true;
63 return false;
64 }
65
66 function shellSingleQuote(s: string): string {
67 return `'${s.replace(/'/g, `'\\''`)}'`;
68 }
69
70 // The bootstrap snippet that runs inside the pod. Keep this self-contained:
71 // it must work with only the env vars Sagan injects (SAGAN_*, the forwarded
72 // CLIENT_ENV_ALLOWLIST set, and SAGAN_USER_CMD_B64).
73 const BOOTSTRAP_SCRIPT = `
74 set -euo pipefail
75 export PATH="$HOME/.local/bin:$PATH"
76
77 # ─── Required env (set by Sagan dispatcher) ────────────────────────────────
78 : "\${GITHUB_TOKEN:?GITHUB_TOKEN missing — check Sagan client-repo .env forwarding}"
79 : "\${SAGAN_EPS_BRANCH:?SAGAN_EPS_BRANCH missing — orchestrator must set pod_spec.env.SAGAN_EPS_BRANCH after the implementer pushes the per-experiment branch}"
80 : "\${SAGAN_USER_CMD_B64:?SAGAN_USER_CMD_B64 missing — dispatcher wrapper is broken}"
81
82 # ─── Cache redirects (bootstrap_pod.sh step 6) ─────────────────────────────
83 export HF_HOME=/workspace/.cache/huggingface
84 export WANDB_CACHE_DIR=/workspace/.cache/wandb
85 export WANDB_DATA_DIR=/workspace/.cache/wandb
86 export UV_CACHE_DIR=/workspace/.cache/uv
87 export TRITON_CACHE_DIR=/workspace/.cache/triton
88 mkdir -p "$HF_HOME" "$WANDB_CACHE_DIR" "$UV_CACHE_DIR" "$TRITON_CACHE_DIR"
89
90 # ─── Install uv if missing (bootstrap_pod.sh step 2) ───────────────────────
91 if ! command -v uv >/dev/null 2>&1; then
92 curl …11:04:30 PMtool_calltools
tool=Bash
Bash
11:04:30 PMtool_resulttools
Approval requests: 1 4a4ad49e-d969-4186-923f-e08e799d7497 approved | All critics returned. Merged round-1 verdict: - **Methodology (Claude alone, Co First 10 events (earliest): 2026-05-13T23:02:23 | no-name | Owner re-running #366 after SDK→headless CLI refactor; pod_spec dockerArgs already corrected. 2026-05-13T22:57:41 | no-name | Owner: restore to awaiting-approval after spurious pod-stop cascade 2026-05-13T22:14:27 | no-name | RunPod pod stopped; volume preserved. 2026-05-13T22:13:46 | no-name | 5% · bootstrap complete on branch issue-366 2026-05-13T22:03:05 | no-name | RunPod pod is running. 2026-05-13T22:02:26 | no-name | RunPod pod dispatched; waiting for runtime. 2026-05-13T22:01:41 | no-name | First dispatch (pod wknbhrm3r9v4tt) looped on exit-127: dockerArgs cd /workspace but bootstrap wrapper clones repo to /w 2026-05-13T22:01:34 | no-name | 2026-05-13T21:58:35 | no-name | 0% · experiment exited with code 127 2026-05-13T21:58:34 | no-name | 5% · bootstrap complete on branch issue-366 Distinct event names: 50 x <none>
11:04:35 PMtool_calltools
tool=Bash
Bash
11:04:35 PMtool_resulttools
Total events: 50 2026-05-13T21:52:57 | 0% · experiment exited with code 127 2026-05-13T21:53:13 | 5% · bootstrap complete on branch issue-366 2026-05-13T21:53:14 | 0% · experiment exited with code 127 2026-05-13T21:53:31 | 5% · bootstrap complete on branch issue-366 2026-05-13T21:53:32 | 0% · experiment exited with code 127 2026-05-13T21:53:49 | 5% · bootstrap complete on branch issue-366 2026-05-13T21:53:50 | 0% · experiment exited with code 127 2026-05-13T21:54:06 | 5% · bootstrap complete on branch issue-366 2026-05-13T21:54:07 | 0% · experiment exited with code 127 2026-05-13T21:54:23 | 5% · bootstrap complete on branch issue-366 2026-05-13T21:54:24 | 0% · experiment exited with code 127 2026-05-13T21:54:42 | 5% · bootstrap complete on branch issue-366 2026-05-13T21:54:43 | 0% · experiment exited with code 127 2026-05-13T21:55:00 | 5% · bootstrap complete on branch issue-366 2026-05-13T21:55:00 | 0% · experiment exited with code 127 2026-05-13T21:55:17 | 5% · bootstrap complete on branch issue-366 2026-05-13T21:55:18 | 0% · experiment exited with code 127 2026-05-13T21:55:35 | 5% · bootstrap complete on branch issue-366 2026-05-13T21:55:36 | 0% · experiment exited with code 127 2026-05-13T21:55:52 | 5% · bootstrap complete on branch issue-366 2026-05-13T21:55:53 | 0% · experiment exited with code 127 2026-05-13T21:56:10 | 5% · bootstrap complete on branch issue-366 2026-05-13T21:56:11 | 0% · experiment exited with code 127 2026-05-13T21:56:27 | 5% · bootstrap complete on branch issue-366 2026-05-13T21:56:28 | 0% · experiment exited with code 127 2026-05-13T21:56:45 | 5% · bootstrap complete on branch issue-366 2026-05-13T21:56:46 | 0% · experiment exited with code 127 2026-05-13T21:57:01 | 5% · bootstrap complete on branch issue-366 2026-05-13T21:57:02 | 0% · experiment exited with code 127 2026-05-13T21:57:18 | 5% · bootstrap complete on branch issue-366 2026-05-13T21:57:19 | 0% · experiment exited with code 127 2026-05-13T21:57:36 | 5% · bootstrap complete on branch issue-366 2026-05-13T21:57:36 | 0% · experiment exited with code 127 2026-05-13T21:57:53 | 5% · bootstrap complete on branch issue-366 2026-05-13T21:57:54 | 0% · experiment exited with code 127 2026-05-13T21:58:11 | 5% · bootstrap complete on branch issue-366 2026-05-13T21:58:11 | 0% · experiment exited with code 127 2026-05-13T21:58:28 | 5% · bootstrap complete on branch issue-366 2026-05-13T21:58:29 | 0% · experiment exited with code 127 2026-05-13T21:58:34 | RunPod pod stopped; volume preserved. 2026-05-13T21:58:34 | 5% · bootstrap complete on branch issue-366 2026-05-13T21:58:35 | 0% · experiment exited with code 127 2026-05-13T22:01:34 | 2026-05-13T22:01:41 | First dispatch (pod wknbhrm3r9v4tt) looped on exit-127: dockerArgs cd /workspace but bootstrap wrapper clones repo to /workspace/explore-per 2026-05-13T22:02:26 | RunPod pod dispatched; waiting for runtime. 2026-05-13T22:03:05 | RunPod pod is running. 2026-05-13T22:13:46 | 5% · bootstrap complete on branch issue-366 2026-05-13T22:14:27 | RunPod pod stopped; volume preserved. 2026-05-13T22:57:41 | Owner: restore to awaiting-approval after spurious pod-stop cascade 2026-05-13T23:02:23 | Owner re-running #366 after SDK→headless CLI refactor; pod_spec dockerArgs already corrected.
11:04:52 PMtool_calltools
tool=Bash
Bash
11:04:52 PMtool_resulttools
(Bash completed with no output)
11:04:57 PMtool_calltools
tool=Bash
Bash
11:04:57 PMtool_resulttools
API token starts with: sk_k_Zwb...
11:05:04 PMtool_calltools
tool=Bash
Bash
11:05:04 PMtool_resulttools
Exit code 1
-rw-r--r-- 1 thomasjiralerspong thomasjiralerspong 0 May 13 23:04 /tmp/workflow_events.json
Traceback (most recent call last):
File "<string>", line 3, in <module>
File "/usr/lib/python3.10/json/__init__.py", line 293, in load
return loads(fp.read(),
File "/usr/lib/python3.10/json/__init__.py", line 346, in loads
return _default_decoder.decode(s)
File "/usr/lib/python3.10/json/decoder.py", line 337, in decode
obj, end = self.raw_decode(s, idx=_w(s, 0).end())
File "/usr/lib/python3.10/json/decoder.py", line 355, in raw_decode
raise JSONDecodeError("Expecting value", s, err.value) from None
json.decoder.JSONDecodeError: Expecting value: line 1 column 1 (char 0)11:05:07 PMtool_calltools
tool=Bash
Bash
11:05:07 PMtool_resulttools
usage: sagan_state.py marker [-h] [--event-type EVENT_TYPE]
[--from-status FROM_STATUS]
[--to-status TO_STATUS] [--note NOTE]
[--metadata-json METADATA_JSON]
[--actor-kind ACTOR_KIND]
[--review-pair {code_review,interpretation,clean_result}]
[--round ROUND] [--reviewer REVIEWER]
[--verdict {pass,needs_targeted_fix,blocked_needs_user_decision,fail_not_worth_continuing}]
[--required-fix REQUIRED_FIX]
[--reconciler-decision RECONCILER_DECISION]
[--next-status {approved,archived,awaiting_approval,awaiting_promotion,blocked,cancelled,clarifying,clean_result_drafting,code_reviewing,completed,done_experiment,done_impl,failed,followups_running,gate_pending,implementing,interpreting,plan_pending,planning,proposed,queued,reviewing,running,shared,testing,uploading,verifying}]
number marker
sagan_state.py marker: error: the following arguments are required: marker11:05:10 PMtool_calltools
tool=Bash
Bash
11:05:10 PMtool_resulttools
usage: sagan_state.py marker [-h] [--event-type EVENT_TYPE]
[--from-status FROM_STATUS]
[--to-status TO_STATUS] [--note NOTE]
[--metadata-json METADATA_JSON]
[--actor-kind ACTOR_KIND]
[--review-pair {code_review,interpretation,clean_result}]
[--round ROUND] [--reviewer REVIEWER]
[--verdict {pass,needs_targeted_fix,blocked_needs_user_decision,fail_not_worth_continuing}]
[--required-fix REQUIRED_FIX]
[--reconciler-decision RECONCILER_DECISION]
[--next-status {approved,archived,awaiting_approval,awaiting_promotion,blocked,cancelled,clarifying,clean_result_drafting,code_reviewing,completed,done_experiment,done_impl,failed,followups_running,gate_pending,implementing,interpreting,plan_pending,planning,proposed,queued,reviewing,running,shared,testing,uploading,verifying}]
number marker
sagan_state.py marker: error: the following arguments are required: marker11:05:14 PMtool_calltools
tool=Bash
Bash
11:05:14 PMtool_resulttools
usage: sagan_state.py marker [-h] [--event-type EVENT_TYPE]
[--from-status FROM_STATUS]
[--to-status TO_STATUS] [--note NOTE]
[--metadata-json METADATA_JSON]
[--actor-kind ACTOR_KIND]
[--review-pair {code_review,interpretation,clean_result}]
[--round ROUND] [--reviewer REVIEWER]
[--verdict {pass,needs_targeted_fix,blocked_needs_user_decision,fail_not_worth_continuing}]
[--required-fix REQUIRED_FIX]
[--reconciler-decision RECONCILER_DECISION]
[--next-status {approved,archived,awaiting_approval,awaiting_promotion,blocked,cancelled,clarifying,clean_result_drafting,code_reviewing,completed,done_experiment,done_impl,failed,followups_running,gate_pending,implementing,interpreting,plan_pending,planning,proposed,queued,reviewing,running,shared,testing,uploading,verifying}]
number marker
positional arguments:
number
marker
options:
-h, --help show this help message and exit
--event-type EVENT_TYPE
--from-status FROM_STATUS
--to-status TO_STATUS
--note NOTE
--metadata-json METADATA_JSON
--actor-kind ACTOR_KIND
--review-pair {code_review,interpretation,clean_result}
--round ROUND
--reviewer REVIEWER
--verdict {pass,needs_targeted_fix,blocked_needs_user_decision,fail_not_worth_continuing}
--required-fix REQUIRED_FIX
--reconciler-decision RECONCILER_DECISION
--next-status {approved,archived,awaiting_approval,awaiting_promotion,blocked,cancelled,clarifying,clean_result_drafting,code_reviewing,completed,done_experiment,done_impl,failed,followups_running,gate_pending,implementing,interpreting,plan_pending,planning,proposed,queued,reviewing,running,shared,testing,uploading,verifying}11:05:21 PMtool_calltools
tool=Bash
Bash
11:05:22 PMtool_resulttools
usage: sagan_state.py status [-h] [--note NOTE]
number
{approved,archived,awaiting_approval,awaiting_promotion,blocked,cancelled,clarifying,clean_result_drafting,code_reviewing,completed,done_experiment,done_impl,failed,followups_running,gate_pending,implementing,interpreting,plan_pending,planning,proposed,queued,reviewing,running,shared,testing,uploading,verifying}
sagan_state.py status: error: the following arguments are required: status
Top-level keys: ['experiment', 'events', 'approvalRequests']11:05:28 PMtool_calltools
tool=Bash
Bash
11:05:28 PMtool_resulttools
status: running
runpodPodId: None
runpodStatus: None
50 events
Recent (last 10):
2026-05-13T21:58:11 | kind= <none> | 5% · bootstrap complete on branch issue-366 meta= {}
2026-05-13T21:58:11 | kind= <none> | 0% · experiment exited with code 127 meta= {}
2026-05-13T21:58:28 | kind= <none> | 5% · bootstrap complete on branch issue-366 meta= {}
2026-05-13T21:58:29 | kind= <none> | 0% · experiment exited with code 127 meta= {}
2026-05-13T21:58:34 | kind= <none> | RunPod pod stopped; volume preserved. meta= {}
2026-05-13T21:58:34 | kind= <none> | 5% · bootstrap complete on branch issue-366 meta= {}
2026-05-13T21:58:35 | kind= <none> | 0% · experiment exited with code 127 meta= {}
2026-05-13T22:01:34 | kind= <none> | meta= {}
2026-05-13T22:01:41 | kind= <none> | First dispatch (pod wknbhrm3r9v4tt) looped on exit-127: dockerArgs cd /workspace but bootstrap wrapp meta= {}
2026-05-13T22:02:26 | kind= <none> | RunPod pod dispatched; waiting for runtime. meta= {}
2026-05-13T22:03:05 | kind= <none> | RunPod pod is running. meta= {}
2026-05-13T22:13:46 | kind= <none> | 5% · bootstrap complete on branch issue-366 meta= {}
2026-05-13T22:14:27 | kind= <none> | RunPod pod stopped; volume preserved. meta= {}
2026-05-13T22:57:41 | kind= <none> | Owner: restore to awaiting-approval after spurious pod-stop cascade meta= {}
2026-05-13T23:02:23 | kind= <none> | Owner re-running #366 after SDK→headless CLI refactor; pod_spec dockerArgs already corrected. meta= {}11:06:00 PMtool_calltools
tool=Bash
Bash
11:06:00 PMtool_resulttools
2026-05-13T23:02:23 | | Owner re-running #366 after SDK→headless CLI refactor; pod_spec dockerArgs already corrected.
11:06:04 PMtool_calltools
tool=Bash
Bash
11:06:04 PMtool_resulttools
29a985e7aafd9e7968a902411f62e19f52b26ef3 refs/heads/issue-366 --- 29a985e7 issue #366: exclude A∩B pre-existing shared subtokens from forbidden set in marker resolver b3bd694d issue #366: cross-persona chunk-binding cascade experiment 125e78f8 Add TrainLoraConfig.backend flag scaffold for Unsloth adoption a4652b62 Route EPS workflow state through Sagan 4129f88d Add Sagan pod progress reporting guidance Shell cwd was reset to /home/thomasjiralerspong/sagan
11:06:16 PMtool_calltools
tool=Bash
Bash
11:06:16 PMtool_resulttools
runpodAccount: team
configYaml:
Full podSpec:
{
"env": {
"SAGAN_EPS_BRANCH": "issue-366",
"SAGAN_EPS_COMMIT_SHA": "29a985e7aafd9e7968a902411f62e19f52b26ef3"
},
"name": "366-cascading-chunk-binding-position-matched",
"config": {
"command": "Run the 366 cascading chunk-binding sweep on Qwen-2.5-7B-Instruct (11 LoRA adapters, position-matched 1-word filler, recipient-EOS-masked); see scripts/experiments/366/run_366.sh on branch issue-366.",
"artifacts": [
"artifacts/366/adapter_{N}_{arm}_seed{seed}.safetensors",
"artifacts/366/adapter_3_ablate_seed42.safetensors",
"artifacts/366/train_log_{N}_{arm}_seed{seed}.jsonl",
"artifacts/366/train_rows_{N}_{arm}_seed{seed}.jsonl",
"artifacts/366/eval_completions_{N}_{arm}_seed{seed}.jsonl",
"artifacts/366/seeded_probe_completions_{N}_{arm}_seed{seed}.jsonl",
"artifacts/366/matcher_hits_{N}_{arm}_seed{seed}.csv",
"artifacts/366/cell_aggregates_{N}_{arm}_seed{seed}.csv",
"artifacts/366/donor_fidelity.csv",
"artifacts/366/word_pool.txt",
"artifacts/366/cascade_curves.json",
"artifacts/366/seeded_probe_results.json",
"artifacts/366/figures/cascade_curve_per_N.svg",
"artifacts/366/figures/full_cascade_rate.svg",
"artifacts/366/figures/position_distribution.svg",
"artifacts/366/figures/seeded_probe.svg",
"artifacts/366/run_manifest.json"
]
},
"gpuType": "H100",
"gpuCount": 1,
"volumeGb": 100,
"cloudType": "SECURE",
"dockerArgs": "bash -lc 'set -euo pipefail; cd /workspace/explore-persona-space && bash scripts/experiments/366/run_366.sh'",
"containerDiskGb": 100,
"estimatedMinutes": 240
}11:06:36 PMassistant_textagent
Based on the diagnostics: implementation is complete on `origin/issue-366` at `29a985e7` (includes both base impl and a reviewer-fix commit), `pod_spec.env` already has the branch/commit spliced in, and status is `running` but no pod is currently dispatched. The owner re-ran #366 expecting dispatch. I'll proceed to step 4 (dispatch via pod-provisioner).
11:06:40 PMtool_calltools
tool=TodoWrite
TodoWrite
11:06:40 PMtool_resulttools
Todos have been modified successfully. Ensure that you continue to use the todo list to track your progress. Please proceed with the current tasks if applicable
11:06:45 PMtool_calltools
tool=Bash
Bash
11:06:46 PMtool_resulttools
{
"id": "d8ddad1f-a8f0-43ca-8209-0d1933081822",
"ok": true
}11:06:52 PMtool_calltools
tool=TodoWrite
TodoWrite
11:06:52 PMtool_resulttools
Todos have been modified successfully. Ensure that you continue to use the todo list to track your progress. Please proceed with the current tasks if applicable
11:06:56 PMassistant_textagent
Now spawning pod-provisioner to dispatch a fresh pod for #366. Since the pod_spec has no `substitution_policy`, the provisioner will use defaults.
11:07:12 PMtool_calltools
tool=Agent
Agent
11:07:14 PMtool_calltools
tool=Read
Read
11:07:14 PMtool_resulttools
1 ---
2 name: feedback-spec-json-quoting
3 description: Write --spec-json content to a temp file and cat it into the variable; heredoc expansion introduces a leading newline that fails JSON parsing at position 1
4 metadata:
5 type: feedback
6 ---
7
8 When passing --spec-json to pod-tool attempt, do NOT use a heredoc directly in the variable assignment. The heredoc introduces a leading newline which makes pod-tool report "Expected property name or '}' in JSON at position 1" and exit 2.
9
10 **Why:** The shell heredoc places a newline at the very start of the variable value before the opening `{`.
11
12 **How to apply:** Write the JSON to a temp file (`/tmp/specNNN.json`) with `cat > /tmp/specNNN.json << 'SPECEOF'`, validate with `python3 -c "import json,sys; json.load(open('/tmp/specNNN.json'))"`, then compact to a single line with `SPEC=$(python3 -c "import json; print(json.dumps(json.load(open('/tmp/specNNN.json'))))")` and pass `--spec-json "$SPEC"`. Do NOT use `SPEC=$(cat /tmp/specNNN.json)` — the embedded literal newlines in the heredoc-written file still cause the same parse failure at position 1. The `python3 json.dumps` step is mandatory to collapse the JSON to one line.
13 11:07:19 PMtool_calltools
tool=Bash
Bash
11:07:19 PMtool_resulttools
JSON valid
11:07:21 PMtool_calltools
tool=Bash
Bash
11:07:21 PMtool_resulttools
Spec length: 415
First 80 chars: {"name": "366-cascading-chunk-binding-position-matched", "gpuType": "H100", "gpu11:07:24 PMtool_calltools
tool=Bash
Bash
11:07:27 PMtool_resulttools
> @sagan/runner@0.0.0 pod-tool /home/thomasjiralerspong/sagan/services/runner
> tsx scripts/pod-tool.ts "attempt" "--agent-run-id" "manual-test-1778713343" "--run-index" "0" "--spec-json" "{\"name\": \"366-cascading-chunk-binding-position-matched\", \"gpuType\": \"H100\", \"gpuCount\": 1, \"volumeGb\": 100, \"containerDiskGb\": 100, \"cloudType\": \"SECURE\", \"estimatedMinutes\": 240, \"dockerArgs\": \"bash -lc 'set -euo pipefail; cd /workspace/explore-persona-space && bash scripts/experiments/366/run_366.sh'\", \"env\": {\"SAGAN_EPS_BRANCH\": \"issue-366\", \"SAGAN_EPS_COMMIT_SHA\": \"29a985e7aafd9e7968a902411f62e19f52b26ef3\"}}" "--account" "team"
{"ok":false,"fatal":true,"error":{"code":"fatal","message":"invalid input syntax for type uuid: \"manual-test-1778713343\""}}
/home/thomasjiralerspong/sagan/services/runner:
ERR_PNPM_RECURSIVE_RUN_FIRST_FAIL @sagan/runner@0.0.0 pod-tool: `tsx scripts/pod-tool.ts "attempt" "--agent-run-id" "manual-test-1778713343" "--run-index" "0" "--spec-json" "{\"name\": \"366-cascading-chunk-binding-position-matched\", \"gpuType\": \"H100\", \"gpuCount\": 1, \"volumeGb\": 100, \"containerDiskGb\": 100, \"cloudType\": \"SECURE\", \"estimatedMinutes\": 240, \"dockerArgs\": \"bash -lc 'set -euo pipefail; cd /workspace/explore-persona-space && bash scripts/experiments/366/run_366.sh'\", \"env\": {\"SAGAN_EPS_BRANCH\": \"issue-366\", \"SAGAN_EPS_COMMIT_SHA\": \"29a985e7aafd9e7968a902411f62e19f52b26ef3\"}}" "--account" "team"`
Exit status 211:07:30 PMtool_calltools
tool=Bash
Bash
11:07:30 PMtool_resulttools
id | kind | status | created_at --------------------------------------+------------+-----------+------------------------------- 9ba7e996-0802-4241-b1c7-3ad1d5413878 | apply | running | 2026-05-13 23:02:23.837607+00 f95d6c43-b724-4be7-a6b9-6e5067ef1e8b | apply | completed | 2026-05-13 17:56:54.039935+00 5ddcaa08-b9ab-4037-b04e-cc998552427e | apply | completed | 2026-05-13 13:26:24.935903+00 c2394f02-7630-400d-9684-ec5b7a87dcd4 | apply | failed | 2026-05-13 13:10:29.343581+00 1cd7e97c-df5f-435b-ba54-08ec36860ca8 | experiment | completed | 2026-05-13 12:54:58.946036+00 d80b786e-ddde-4f48-80c2-1556bab49697 | apply | completed | 2026-05-13 05:03:31.518608+00 (6 rows)
11:07:34 PMtool_calltools
tool=Bash
Bash
11:07:34 PMtool_resulttools
Exit code 1
ERROR: column ar.experiment_id does not exist
LINE 1: ..._id FROM agent_runs ar LEFT JOIN experiments e ON ar.experim...
^11:07:36 PMtool_calltools
tool=Bash
Bash
11:07:36 PMtool_resulttools
Table "public.agent_runs"
Column | Type | Collation | Nullable | Default
-----------------------+--------------------------+-----------+----------+-------------------------------
id | uuid | | not null | gen_random_uuid()
kind | agent_run_kind | | not null |
provider | agent_provider | | not null | 'claude_code'::agent_provider
status | agent_run_status | | not null | 'queued'::agent_run_status
request | text | | not null |
plan_md | text | | |
approval_required | boolean | | not null | true
approved_by | uuid | | |
approved_at | timestamp with time zone | | |
scope_entity_kind | entity_kind | | |
scope_entity_id | uuid | | |
chat_session_id | uuid | | |
branch_name | text | | |
vercel_deployment_url | text | | |
runpod_pod_id | text | | |
runpod_status | text | | |
transcript_log_path | text | | |
changed_files_json | jsonb | | |
last_error | text | | |
started_at | timestamp with time zone | | |
completed_at | timestamp with time zone | | |
created_at | timestamp with time zone | | not null | now()
updated_at | timestamp with time zone | | not null | now()
runpod_account | runpod_account | | not null | 'team'::runpod_account
runpod_pod_ids | text[] | | |
plan_json | jsonb | | |
Indexes:
"agent_runs_pkey" PRIMARY KEY, btree (id)
"agent_runs_created_idx" btree (created_at)
"agent_runs_kind_idx" btree (kind)
"agent_runs_scope_idx" btree (scope_entity_kind, scope_entity_id)
"agent_runs_status_idx" btree (status)
Foreign-key constraints:
"agent_runs_approved_by_users_id_fk" FOREIGN KEY (approved_by) REFERENCES users(id) ON DELETE SET NULL
Referenced by:
TABLE "agent_run_events" CONSTRAINT "agent_run_events_run_id_agent_runs_id_fk" FOREIGN KEY (run_id) REFERENCES agent_runs(id) ON DELETE CASCADE
TABLE "approval_requests" CONSTRAINT "approval_requests_agent_run_id_agent_runs_id_fk" FOREIGN KEY (agent_run_id) REFERENCES agent_runs(id) ON DELETE SET NULL11:07:38 PMtool_calltools
tool=Bash
Bash
11:07:38 PMtool_resulttools
id | kind | status | scope_entity_kind | scope_entity_id | created_at --------------------------------------+------------+-----------+-------------------+--------------------------------------+------------------------------- 9ba7e996-0802-4241-b1c7-3ad1d5413878 | apply | running | experiment | b2766257-ac70-4f37-b904-697c7dd474ce | 2026-05-13 23:02:23.837607+00 badf3a1f-9746-4bfe-a13e-a65f8372e9ad | apply | cancelled | experiment | b2766257-ac70-4f37-b904-697c7dd474ce | 2026-05-13 20:11:38.684904+00 f5e51eae-3ebb-4495-9902-c5f2234dff69 | experiment | cancelled | experiment | b2766257-ac70-4f37-b904-697c7dd474ce | 2026-05-13 20:11:38.437975+00 f95d6c43-b724-4be7-a6b9-6e5067ef1e8b | apply | completed | experiment | b2766257-ac70-4f37-b904-697c7dd474ce | 2026-05-13 17:56:54.039935+00 5ddcaa08-b9ab-4037-b04e-cc998552427e | apply | completed | experiment | b2766257-ac70-4f37-b904-697c7dd474ce | 2026-05-13 13:26:24.935903+00 c2394f02-7630-400d-9684-ec5b7a87dcd4 | apply | failed | experiment | b2766257-ac70-4f37-b904-697c7dd474ce | 2026-05-13 13:10:29.343581+00 8041b150-c6ce-47f5-b946-ca30df6074ad | apply | failed | experiment | b2766257-ac70-4f37-b904-697c7dd474ce | 2026-05-13 13:00:27.490767+00 1cd7e97c-df5f-435b-ba54-08ec36860ca8 | experiment | completed | experiment | b2766257-ac70-4f37-b904-697c7dd474ce | 2026-05-13 12:54:58.946036+00 f0fbe045-2693-4e29-be84-5882e9d61a32 | qa | completed | experiment | b2766257-ac70-4f37-b904-697c7dd474ce | 2026-05-13 12:29:49.828198+00 8f63cafe-9850-42f1-9dce-7dcdb7d3e86b | qa | failed | experiment | b2766257-ac70-4f37-b904-697c7dd474ce | 2026-05-13 12:27:54.699884+00 (10 rows)
11:07:43 PMtool_calltools
tool=Bash
Bash
11:07:43 PMtool_resulttools
id | kind | status | scope_entity_kind | scope_entity_id | created_at --------------------------------------+------------+-----------+-------------------+--------------------------------------+------------------------------- f5e51eae-3ebb-4495-9902-c5f2234dff69 | experiment | cancelled | experiment | b2766257-ac70-4f37-b904-697c7dd474ce | 2026-05-13 20:11:38.437975+00 1cd7e97c-df5f-435b-ba54-08ec36860ca8 | experiment | completed | experiment | b2766257-ac70-4f37-b904-697c7dd474ce | 2026-05-13 12:54:58.946036+00 4a4ad49e-d969-4186-923f-e08e799d7497 | experiment | cancelled | experiment | b2766257-ac70-4f37-b904-697c7dd474ce | 2026-05-13 11:06:25.232522+00 84e3eb57-0866-4e9b-803c-45ddf0e9b4ea | experiment | failed | experiment | b2766257-ac70-4f37-b904-697c7dd474ce | 2026-05-13 10:59:45.824298+00 d396a4df-6c9c-4c22-96c8-57aec787fe02 | experiment | failed | experiment | b2766257-ac70-4f37-b904-697c7dd474ce | 2026-05-13 10:56:23.854244+00 (5 rows)
11:07:47 PMtool_calltools
tool=Read
Read
11:07:47 PMtool_resulttools
1 /**
2 * CLI for the pod-provisioner sub-agent (see .claude/agents/pod-provisioner.md).
3 *
4 * The agent runs an adaptive dispatch loop: it calls `attempt` with a candidate
5 * spec, reads the structured JSON result, decides what to vary on
6 * SUPPLY_CONSTRAINT (consolidate, swap cloud type, swap GPU family, swap
7 * account, …), and repeats. When it lands a working fleet it calls `commit`
8 * to finalize the agent_run. If it runs out of substitution options it calls
9 * `escalate` to flip the run to awaiting_approval with a structured note.
10 *
11 * Subcommands:
12 * attempt one dispatch attempt; returns success or structured error
13 * commit finalize a successful fleet (status=deploying, deploy_completed)
14 * escalate give up and flip run to awaiting_approval with summary
15 * record-substitution audit log entry on the agent_run for every variant tried
16 * stop tear down a pod (cleanup during multi-pod partials)
17 *
18 * Every subcommand prints exactly one JSON object to stdout (success or error)
19 * so the agent can parse the result. Errors go to stderr; the process exits 0
20 * for "agent-handleable" outcomes (e.g. SUPPLY_CONSTRAINT from `attempt`) and
21 * non-zero only for unrecoverable infrastructure errors (DB unreachable etc.).
22 *
23 * Invoke via:
24 * pnpm --filter @sagan/runner pod-tool <subcommand> [flags]
25 */
26 import '../src/env.js';
27
28 import { eq } from 'drizzle-orm';
29 import { db, schema } from '../src/db.js';
30 import { emitEvent } from '../src/queue.js';
31 import { recordTrail } from '../src/trail.js';
32 import {
33 buildPodEnv,
34 commitDispatchedPod,
35 parseRunpodDate,
36 randomProgressToken,
37 setExperimentStatus,
38 validatePodSpecs,
39 type ParsedSpec,
40 } from '../src/dispatcher.js';
41 import {
42 dispatchPod,
43 stopPod as runpodStopPod,
44 type DispatchPodSpec,
45 type RunpodAccount,
46 } from '../src/tools/runpod.js';
47
48 interface AgentRunRow {
49 id: string;
50 kind: string;
51 status: string;
52 scopeEntityKind: string | null;
53 scopeEntityId: string | null;
54 runpodAccount: RunpodAccount;
55 }
56
57 function emit(result: unknown): never {
58 process.stdout.write(`${JSON.stringify(result)}\n`);
59 process.exit(0);
60 }
61
62 function fatal(message: string): never {
63 process.stdout.write(`${JSON.stringify({ ok: false, fatal: true, error: { code: 'fatal', message } })}\n`);
64 process.exit(2);
65 }
66
67 function flag(args: string[], name: string): string | undefined {
68 const idx = args.indexOf(`--${name}`);
69 if (idx >= 0) return args[idx + 1];
70 const equalsForm = args.find((a) => a.startsWith(`--${name}=`));
71 return equalsForm?.slice(name.length + 3);
72 }
73
74 function requireFlag(args: string[], name: string): string {
75 const v = flag(args, name);
76 if (!v) fatal(`missing required flag --${name}`);
77 return v;
78 }
79
80 function parseAccount(value: string | undefined, fallback: RunpodAccount): RunpodAccount {
81 if (!value) return fallback;
82 if (value === 'team' || value === 'personal') return value;
83 fatal(`--account must be 'team' or 'personal', got '${value}'`);
84 }
85
86 async function loadAgentRun(runId: string): Promise<AgentRunRow> {
87 const rows = await db()
88 .select({
89 id: schema.agentRuns.id,
90 kind: schema.agentRuns.kind,
91 status: schema.agentRuns.status,
92 scopeEntityKind: schema.agentRuns.scopeEntityKind,
93 scopeEntityId: schema.agentRuns.scopeEntityId,
94 runpodAccount: schema.agentRuns.runpodAccount,
95 })
96 .from(schema.agentRuns)
97 .where(eq(schema.agentRuns.id, runId))
98 .limit(1);
99 const row = rows[0];
100 if (!row) fatal(`agent_run ${runId} not found`);
101 return row as AgentRunRow;
102 }
103
104 // ─── attempt ────────────────────────────────────────────────────────────────
105 //
106 /…11:07:58 PMtool_calltools
tool=Bash
Bash
11:07:58 PMtool_resulttools
id | kind | status | created_at --------------------------------------+------------+---------+------------------------------ 9a0ee013-541e-42b4-83e6-5ec2eae53c67 | experiment | running | 2026-05-13 23:07:58.27603+00 (1 row) INSERT 0 1
11:08:02 PMtool_calltools
tool=Bash
Bash
11:08:04 PMtool_resulttools
> @sagan/runner@0.0.0 pod-tool /home/thomasjiralerspong/sagan/services/runner
> tsx scripts/pod-tool.ts "attempt" "--agent-run-id" "9a0ee013-541e-42b4-83e6-5ec2eae53c67" "--run-index" "0" "--spec-json" "{\"name\": \"366-cascading-chunk-binding-position-matched\", \"gpuType\": \"H100\", \"gpuCount\": 1, \"volumeGb\": 100, \"containerDiskGb\": 100, \"cloudType\": \"SECURE\", \"estimatedMinutes\": 240, \"dockerArgs\": \"bash -lc 'set -euo pipefail; cd /workspace/explore-persona-space && bash scripts/experiments/366/run_366.sh'\", \"env\": {\"SAGAN_EPS_BRANCH\": \"issue-366\", \"SAGAN_EPS_COMMIT_SHA\": \"29a985e7aafd9e7968a902411f62e19f52b26ef3\"}}" "--account" "team"
{"ok":false,"error":{"code":"TRANSIENT_RUNPOD_ERROR","message":"GraphQL errors: [{\"message\":\"Something went wrong. Please try again later or contact support.\",\"path\":[\"podFindAndDeployOnDemand\"],\"extensions\":{\"code\":\"INTERNAL_SERVER_ERROR\"}}]","suggested_dimensions":["retry_same_spec_with_backoff"]}}11:08:08 PMtool_calltools
tool=Bash
Bash
11:08:08 PMtool_resulttools
<tool_use_error>Blocked: sleep 30 followed by: cd /home/thomasjiralerspong/sagan SPEC=$(python3 -c "import json; print(json.dumps(json.load(open('/tmp/spec366.json'))))") OUT=$(pnpm --filter @sagan/runner pod-tool attempt \
--agent-run-id "9a0ee013-541e-42b4-83e6-5ec2eae53c67" \
--run-index 0 \
--spec-json "$SPEC" \
--account team) echo "$OUT". To wait for a condition, use Monitor with an until-loop (e.g. `until <check>; do sleep 2; done`). To wait for a command you started, use run_in_background: true. Do not chain shorter sleeps to work around this block.</tool_use_error>11:08:11 PMtool_calltools
tool=Bash
Bash
11:08:44 PMtool_resulttools
> @sagan/runner@0.0.0 pod-tool /home/thomasjiralerspong/sagan/services/runner
> tsx scripts/pod-tool.ts "attempt" "--agent-run-id" "9a0ee013-541e-42b4-83e6-5ec2eae53c67" "--run-index" "0" "--spec-json" "{\"name\": \"366-cascading-chunk-binding-position-matched\", \"gpuType\": \"H100\", \"gpuCount\": 1, \"volumeGb\": 100, \"containerDiskGb\": 100, \"cloudType\": \"SECURE\", \"estimatedMinutes\": 240, \"dockerArgs\": \"bash -lc 'set -euo pipefail; cd /workspace/explore-persona-space && bash scripts/experiments/366/run_366.sh'\", \"env\": {\"SAGAN_EPS_BRANCH\": \"issue-366\", \"SAGAN_EPS_COMMIT_SHA\": \"29a985e7aafd9e7968a902411f62e19f52b26ef3\"}}" "--account" "team"
{"ok":true,"pod":{"podId":"fldu2y2y8oxwx7","name":"366-cascading-chunk-binding-position-matched","gpuTypeId":"NVIDIA H100 80GB HBM3","gpuCount":1,"desiredStatus":"RUNNING","sshHost":null,"sshPort":null,"costPerHr":2.99,"adjustedCostPerHr":2.99},"podLifecycleId":"61506625-31e7-42dd-a897-240aa0bf196b","sagaRunId":"fa4de764-f5e5-4d9a-9a36-e61bbbb4b931","account":"team"}11:08:46 PMtool_calltools
tool=Bash
Bash
11:08:48 PMtool_resulttools
> @sagan/runner@0.0.0 pod-tool /home/thomasjiralerspong/sagan/services/runner
> tsx scripts/pod-tool.ts "commit" "--agent-run-id" "9a0ee013-541e-42b4-83e6-5ec2eae53c67"
{"ok":true,"podIds":["fldu2y2y8oxwx7"],"count":1}11:08:54 PMtool_resulttools
Committed successfully. **committed 1 pod(s): fldu2y2y8oxwx7** Summary of what happened: - The orchestrator-provided `manual-test-1778713343` was not a valid UUID, so I looked up the experiment's existing agent_run rows and created a fresh `kind=experiment` agent_run (`9a0ee013-541e-42b4-83e6-5ec2eae53c67`) scoped to experiment `b2766257`. - First `attempt` call returned `TRANSIENT_RUNPOD_ERROR` (RunPod internal server error). Retried after 30s backoff. - Second attempt succeeded: pod `fldu2y2y8oxwx7`, GPU `NVIDIA H100 80GB HBM3 x1`, `SECURE` cloud, `$2.99/hr`, account `team`. - `commit` finalized the fleet — agent_run status is now `deploying`, `deploy_completed` event emitted. The watcher takes over from here. agentId: a37ca2c90dd3efb81 (use SendMessage with to: 'a37ca2c90dd3efb81' to continue this agent) <usage>total_tokens: 37335 tool_uses: 15 duration_ms: 102871</usage>
11:09:01 PMassistant_textagent
Pod `fldu2y2y8oxwx7` dispatched. The experiment is estimated ~4 hours. Let me verify the dispatch and then schedule periodic checks.
11:09:05 PMtool_calltools
tool=Bash
Bash
11:09:06 PMtool_resulttools
status: queued runpodPodId: None runpodStatus: None Recent events: 2026-05-13T22:01:34 | 2026-05-13T22:01:41 | First dispatch (pod wknbhrm3r9v4tt) looped on exit-127: dockerArgs cd /workspace but bootstrap wrapper clones repo to /w 2026-05-13T22:02:26 | RunPod pod dispatched; waiting for runtime. 2026-05-13T22:03:05 | RunPod pod is running. 2026-05-13T22:13:46 | 5% · bootstrap complete on branch issue-366 2026-05-13T22:14:27 | RunPod pod stopped; volume preserved. 2026-05-13T22:57:41 | Owner: restore to awaiting-approval after spurious pod-stop cascade 2026-05-13T23:02:23 | Owner re-running #366 after SDK→headless CLI refactor; pod_spec dockerArgs already corrected. 2026-05-13T23:06:46 | Implementation at origin/issue-366@29a985e7 includes reviewer-fix commit; orchestrator resuming from running stage after 2026-05-13T23:08:43 | RunPod pod dispatched; waiting for runtime.
11:09:12 PMassistant_textagent
Pod dispatched. Status is now `queued` (pod-provisioner created a fresh agent_run); pod `fldu2y2y8oxwx7` is awaiting runtime. The experiment is estimated 240 minutes. The runner watcher transitions status automatically when the pod terminates. I'll schedule a wakeup to check progress periodically.
11:09:14 PMtool_calltools
tool=ScheduleWakeup
ScheduleWakeup
11:09:14 PMtool_resulttools
Next wakeup scheduled for 23:40:00 (in 1846s). Nothing more to do this turn — the harness re-invokes you when the wakeup fires or a task-notification arrives.
11:09:17 PMassistant_textagent
End of turn. Pod `fldu2y2y8oxwx7` dispatched for #366; status `queued` → will go `running` shortly. Next check in 30 minutes.
11:09:17 PMsdk_resultagent
success
11:09:17 PMcompletedagent
End of turn. Pod `fldu2y2y8oxwx7` dispatched for #366; status `queued` → will go `running` shortly. Next check in 30 minutes.
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